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1

Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable

Alena Orlenko,Ashley I. Teufel,Peter B. Chi,David A. Liberles

Journal:

Year:

2016

Language:

english

File:

PDF, 1.45 MB

english, 2016

2

INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

Jones, Matthew R., Forester, Brenna R., Teufel, Ashley I., Adams, Rachael V., Anstett, Daniel N., Goodrich, Betsy A., Landguth, Erin L., Joost, Stéphane, Manel, Stéphanie

Journal:

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

3

What Fraction of Duplicates Observed in Recently Sequenced Genomes Is Segregating and Destined to Fail to Fix?

Teufel, Ashley I., Masel, Joanna, Liberles, David A.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 476 KB

english, 2015

4

Models for gene duplication when dosage balance works as a transition state to subsequent neo- or sub-functionalization

Teufel, Ashley I., Liu, Liang, Liberles, David A.

Journal:

BMC Evolutionary Biology

Year:

2016

Language:

english

File:

PDF, 1.12 MB

english, 2016

5

A generalized birth and death process for modeling the fates of gene duplication

Zhao, Jing, Teufel, Ashley I., Liberles, David A., Liu, Liang

Journal:

BMC Evolutionary Biology

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

6

Accelerated simulation of evolutionary trajectories in origin-fixation models

Teufel, Ashley I., Wilke, Claus O.

Journal:

Journal of The Royal Society Interface

Year:

2017

Language:

english

File:

PDF, 7.40 MB

english, 2017

7

Beyond Thermodynamic Constraints: Evolutionary Sampling Generates Realistic Protein Sequence Variation

Jiang, Qian, Teufel, Ashley I., Jackson, Eleisha L., Wilke, Claus O.

Journal:

Year:

2018

Language:

english

File:

PDF, 211 KB

english, 2018

8

On Mechanistic Modeling of Gene Content Evolution: Birth-Death Models and Mechanisms of Gene Birth and Gene Retention

Teufel, Ashley, Zhao, Jing, O'Reilly, Malgorzata, Liu, Liang, Liberles, David

Journal:

Year:

2014

Language:

english

File:

PDF, 959 KB

english, 2014

9

Using the Mutation-Selection Framework to Characterize Selection on Protein Sequences

Teufel, Ashley, Ritchie, Andrew, Wilke, Claus, Liberles, David

Journal:

Year:

2018

Language:

english

File:

PDF, 1.98 MB

english, 2018

10

Sicegar: R package for sigmoidal and double-sigmoidal curve fitting

Caglar, M. Umut, Teufel, Ashley I., Wilke, Claus O.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

11

The many nuanced evolutionary consequences of duplicated genes

Teufel, Ashley I, Johnson, Mackenzie M, Laurent, Jon M, Kachroo, Aashiq H, Marcotte, Edward M, Wilke, Claus O, O’Connell, Mary

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 2.60 MB

english, 2018

12

The many nuanced evolutionary consequences of duplicated genes

Teufel, Ashley I, Johnson, Mackenzie M, Laurent, Jon M, Kachroo, Aashiq H, Marcotte, Edward M, Wilke, Claus O, O'Connell, Mary

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 2.60 MB

english, 2018

13

Evolution and Structure of Proteins and Proteomes

Liberles, David, Teufel, Ashley

Journal:

Year:

2018

Language:

english

File:

PDF, 173 KB

english, 2018

14

Quantifying the relative importance of variation in predation and the environment for species coexistence

Shoemaker, Lauren G., Barner, Allison K., Bittleston, Leonora S., Teufel, Ashley I., Snyder, Robin

Journal:

Ecology Letters

Year:

2020

File:

PDF, 1.16 MB

2020

15

Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs

Laurent, Jon M., Garge, Riddhiman K., Teufel, Ashley I., Wilke, Claus O., Kachroo, Aashiq H., Marcotte, Edward M., Hejnol, Andreas

Journal:

Year:

2020

File:

PDF, 6.62 MB

2020

16

A Phylogenetic Rate Parameter Indicates Different Sequence Divergence Patterns in Orthologs and Paralogs

Ahrens, Joseph B., Teufel, Ashley I., Siltberg-Liberles, Jessica

Journal:

Journal of Molecular Evolution

Year:

2020

File:

PDF, 1.56 MB

2020

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